University of Illinois Urbana-Champaign

Predicting gene expression of yeast with deep learning-based sequence model vs linear regression model EMBARGOED

Chang, Kehang

Tissue-guided LASSO for prediction of clinical drug response using preclinical samples

Huang, Edward W.; Bhope, Ameya; Lim, Jing; Sinha, Saurabh; Emad, Amin

Computational Prediction of Functional Elements through Comparative Genomics

Ling, Xu

"Knowledge-guided analysis of ""omics"" data using the KnowEnG cloud platform"

Blatti, Charles, III; Emad, Amin; Berry, Matthew J.; Gatzke, Lisa; Epstein, Milt; Lanier, Daniel; Rizal, Pramod; Ge, Jing; Liao, Xiaoxia; Sobh, Omar; Lambert, Mike; Post, Corey S.; Xiao, Jinfeng; Groves, Peter; Epstein, Aidan T.; Chen, Xi; Srinivasan, Subhashini; Lehnert, Erik; Kalari, Krishna R.; Wang, Liewei; Weinshilboum, Richard M.; Song, Jun S.; Jongeneel, C. Victor; Han, Jiawei; Ravaioli, Umberto; Sobh, Nahil; Bushell, Colleen B.; Sinha, Saurabh

Predicting G-quadruplex Formation

Calvert, Jacob; Kreig, Alex; Sinha, Saurabh; Myong, Sua

Big Data: Astronomical or genomical?

Stephens, Zachary D.; Lee, Skylar Y.; Faghri, Faraz; Campbell, Roy H.; Zhai, ChengXiang; Efron, Miles J.; Iyer, Ravishankar; Schatz, Michael C.; Sinha, Saurabh; Robinson, Gene E.

Computational Models of Function and Evolution of cis-Regulatory Sequences

He, Xin

Understanding the functional consequences of genetic variation on gene regulation

Khajouei, Farzaneh

Quantifying the functional and evolutionary relationships among sequences, transcription factor binding and gene expression

Peng, Pei-Chen

Understanding co-expressed gene sets by identifying regulators and modeling genomic elements

Blatti, Charles

Computational methods for inferring regulatory mechanisms from sequence and expression variation

Xie, Xiaoman

New insights into cis-regulatory module evolution using in-silico evolutionary simulations

Duque, Thyago

Computational methods for cancer diagnosis and prognosis from FT-IR spectroscopy data

Kwak, Jin Tae

Integrative analysis of transcriptional regulatory programs in mammalian systems

Tabe Bordbar, Shayan

Cis-regulatory module analysis: inferring regulatory networks and underlying mechanisms

Kazemian, Abdol Majid

Characterizing the targets of dysregulated microRNAs in colorectal cancer

Ghaffari, Saba

Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences

Kim, Jaebum

Computational analysis of cis-regulatory mechanisms underlying cellular response to drug perturbations

Hanson, Casey R.

Computational Prediction of Functional Elements through Comparative Genomics

Ling, Xu

Computational modeling of gene expression from regulatory sequences

Samee, Md. Abul Hassan

Information theoretic and machine learning techniques for emerging genomic data analysis

Kim, Minji

Optimization, random resampling, and modeling in bioinformatics

Ge, Weihao

Geographical health data maps for Carle Foundation Hospital and the assessment of rural cancer rates in Illinois

Huang, Meng-Yao

Molecular analyses of endocrine and nutritional factors that affect division of labor and health in honey bees (Apis mellifera)

Wheeler, Marsha

Effective data versioning for collaborative data analytics

Huang, Silu

Structural variant calling by assembly in whole human genomes: Applications in hypoplastic left heart syndrome

Kendzior, Matthew

Bioinformatics analyses of non-coding genomic elements

Zhao, Kai

Requirements and strategies for winning the battle against antibiotic resistance by antisense technology

Kotil, Seyfullah Enes

Neurogenomic dynamics following social interactions in male threespined sticklebacks

Bukhari, Syed Abbas

Bioinformatic methods for analyses of epigenome and RNA interactome

Yu, Pengfei