University of Illinois Urbana-Champaign

Advancing the intravoxel incoherent motion model as a tool for quantifying brain microvascular health

Cerjanic, Alexander

Content Files
CERJANIC-DISSERTATION-2020.pdf

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https://hdl.handle.net/2142/109605

Description

Title
Advancing the intravoxel incoherent motion model as a tool for quantifying brain microvascular health
Author(s)
Cerjanic, Alexander
Issue Date
2020-12-02
Director of Research (if dissertation) or Advisor (if thesis)
Sutton, Bradley P
Doctoral Committee Chair(s)
Sutton, Bradley P
Committee Member(s)
  • Liang, Zhi-Pei
  • Cohen, Neal
  • Llano, Daniel
Department of Study
Bioengineering
Discipline
Bioengineering
Degree Granting Institution
University of Illinois at Urbana-Champaign
Degree Name
Ph.D.
Degree Level
Dissertation
Date of Ingest
2021-03-05T21:45:39Z
Keyword(s)
  • Magnetic Resonance Imaging
  • Diffusion weighted imaging
  • microvascular blood flow
  • intravoxel incoherent motion
  • IVIM
Abstract
Quantification of the state of the microvasculature of the human brain is currently only feasible via invasive histological methods using light microsocopy. In order to correlate the state of the microvasculature of the brain with functional measures such as blood flow or cognition in humans, noninvasive techniques are required. One model for measuring microvascular blood flow is the intravoxel incoherent motion (IVIM) model of pseudodiffusive blood flow. In this work, a set of IVIM-derived microvascular biomarkers are pro- posed to quantify the mean microvascular blood velocity and mean microvessel length via diffusion weighted imaging (DWI). Very long mixing time stimulated acquisition mode diffusion weighted magnetic resonance imaging pulse sequences were developed and implemented to acquire the long diffusion time data required to derive the proposed microvascular biomarkers. To accelerate the computationally burdensome iterative reconstructions used in this work, a novel GPU accelerated toolkit, PowerGrid, was developed to implement the reconstructions. Speed ups in excess of 17x were obtained via PowerGrid on commercial GPUs. To address the challenges of fitting IVIM parameters reliably, two strategies were examined. The first was the application of a combination diffusion tensor-IVIM model as applied to white matter and deep gray matter in the human brain. The second was a novel estimator using a reducing variance at the cost of increased bias by applying bootstrap aggregation from field of machine learning. The bootstrap aggregation estimator was used in a hypercapnia paradigm to attempt to demonstrate the proposed biomarkers in vivo. Finally, future work towards further validating and developing the proposed biomarkers in humans is described.
Graduation Semester
2020-12
Type of Resource
Thesis
Permalink
http://hdl.handle.net/2142/109605
Copyright and License Information
Copyright 2020 Alexander Cerjanic

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