The biosynthesis and discovery of lanthipeptides

An, Linna

Permalink

https://hdl.handle.net/2142/106356 Copy

Description

Title

The biosynthesis and discovery of lanthipeptides

Author(s)

An, Linna

Issue Date

2019-11-26

Director of Research (if dissertation) or Advisor (if thesis)

van der Donk, Wilfred A.

Doctoral Committee Chair(s)

van der Donk, Wilfred A.

Committee Member(s)

• Hergenrother, Paul J.
• Nair, Satish K.
• Mitchell, Douglas A.

Department of Study

Chemistry

Discipline

Chemistry

Degree Granting Institution

University of Illinois at Urbana-Champaign

Degree Name

Ph.D.

Degree Level

Dissertation

Keyword(s)

• lanthipeptide
• biosynthesis
• lipid II
• duramycin
• lysinoalanine
• haloduracin.

Abstract

Natural products and their derivatives have been significant resources for the development of therapeutic compounds. They attracted interests from both academia and industry because of their high structural diversity and potential applications. Lanthipeptides are one class of natural products that have provided antibiotics to the food industry and drug candidates for treating human diseases. Lanthipeptides are polypeptides enzymatically decorated with lanthionine rings and sometimes other post-translational modifications, which dramatically elevate their protease-resistances, improved their chemical stabilities, and increased their structural complexity. To add onto the structure knowledge and biosynthetic toolkits for lanthipeptides, I investigated the biosynthesis and discovery of lanthipeptides during my Ph.D training. Duramycin/cinnamycin-type of lanthipeptides interact tightly with phosphatidylethanolamine and several of their members displayed high potential to be drug candidates. Duramycin contains an activity-essential lysinoalanine ring which is installed by a previously unknown hypothetical protein, DurN. In Chapter 2, I described the mechanism of action studies on DurN. I reconstituted the in vitro activity of DurN. Together with Dr. Cogan, we obtained the co-crystal structures of DurN with its product or substrate analog. We demonstrated that DurN catalyzes the lysinoalanine formation through a unique substrate-assisted catalysis mechanism. Enlightened by the biosynthesis of lanthipeptide, I further designed and initiated a proof-of-concept lanthipeptide discovery project based on the predictions for the potential mode of action of natural products, which is described in Chapter 3. I hypothesized that if the gene encoding a small molecule-processing enzyme locates in the biosynthetic gene cluster of a natural product on the bacterial genome, this processing enzyme may function as the immunity protein to prevent producer viability loss during the production of the natural products, and the natural product may target the small molecule. Following this hypothesis, I identified multiple lanthipeptide biosynthesis gene cluster candidates, and selected kib cluster from Kibdelsporangium phytohabitant KLBMP 1111T for verification. The lanthipeptide was produced in heterologous expression system and displayed an interlocking ring topology with a succinimide moiety as potential warhead. The activity assays of this new lanthipeptide will be carried out in the future studies. To further understand the modes of action for lanthipeptides, in Chapter 4, I investigated the mode of action of lipid II-targeting lanthipeptides. The binding event between nisin–lipid II and Halα–lipid II were characterized using isothermal titration calorimetry. Collectively, these studies further expanded our knowledge on lanthipeptides biosynthesis and discovery.

Graduation Semester

2019-12

Type of Resource

text

Permalink

http://hdl.handle.net/2142/106356

Copyright and License Information

Copyright 2019 Linna An

Owning Collections