University of Illinois Urbana-Champaign

Alignments of genes in the denitrification pathway

Ma, Yanjun; Zilles, Julie L.; Kent, Angela D.

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https://hdl.handle.net/2142/101877

Description

Title
Alignments of genes in the denitrification pathway
Author(s)
  • Ma, Yanjun
  • Zilles, Julie L.
  • Kent, Angela D.
Issue Date
2019
Keyword(s)
  • gene alignment
  • denitrification
Abstract
"Using these gene alignments, we have conducted a comprehensive in silico evaluation of the specificity and coverage of published primer sets for all the commonly used diagnostic genes in the denitrification pathway using the wealth of functional gene sequence data now available. In addition, we have reevaluated the results of past studies in light of our findings on the specificity and coverage of these primer sets. This is supporting information for the manuscript ""An evaluation of primers for detecting denitrifiers via their functional genes"" submitted to the journal Environmental Microbiology."
Type of Resource
text
Language
en
Permalink
http://hdl.handle.net/2142/101877
Sponsor(s)/Grant Number(s)
National Institute of Food and Agriculture, U.S. Department of Agriculture, under award number 2015-67019-23584

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